.. .. image:: ../picture/logo.png
..    :alt: opendock logo
..    :scale: 50%
..    :align: middle

.. .. raw:: html

..    <span style="vertical-align:middle;">Welcome to OpenDock's documentation!</span>
Welcome to OpenDock's documentation!
===================================
OpenDock is a versitile protein-ligand docking framework with diverse scoring functions and sampling strategies. 

Aim 
---
The project is intended to provide an open-source framework for protein-ligand docking by implementing customizable docking strategies.
Check out the :doc:`installation` section for installing, and the :doc:`docking_basic` section for further information.

Availability
------------

All **source code** is available under the `MIT License <https://opensource.org/licenses/MIT>`_ 
from `github.com/guyuehuo/opendock <https://github.com/guyuehuo/opendock-open>`_


.. toctree::
   :maxdepth: 2
   :hidden:
   :caption: Manual

   introduction
   installation
   faq
   citation
   changes

.. toctree::
   :maxdepth: 2
   :hidden:
   :caption: Tutorials

   framework
   docking_requirements
   docking_basic
   docking_multiple
   docking_constrained
   add_custom_costr.rst
   side-chain_optimization
   multi-CPU
   sampler
   external_sf